{
  "_id": "6a1efb44b401979e73418ad9",
  "Package": "transplantr",
  "Type": "Package",
  "Title": "Audit and Research Functions for Transplantation",
  "Version": "0.2.0",
  "Authors@R": "person(\"John\", \"Asher\", email = \"john.asher@outlook.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-8735-6453\"))",
  "Description": "A set of vectorised functions to calculate medical\nequations used in transplantation, focused mainly on\ntransplantation of abdominal organs. These functions include\ndonor and recipient risk indices as used by NHS Blood &\nTransplant, OPTN/UNOS and Eurotransplant, tools for quantifying\nHLA mismatches, functions for calculating estimated glomerular\nfiltration rate (eGFR), a function to calculate the APRI (AST\nto platelet ratio) score used in initial screening of\nsuitability to receive a transplant from a hepatitis C\nseropositive donor and some biochemical unit converter\nfunctions. All functions are designed to work with either US or\ninternational units. References for the equations are provided\nin the vignettes and function documentation.",
  "URL": "https://transplantr.txtools.net,\nhttps://github.com/johnasher/transplantr",
  "BugReports": "https://github.com/johnasher/transplantr/issues",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "6.1.1",
  "VignetteBuilder": "knitr",
  "Language": "en-GB",
  "Repository": "https://johnasher.r-universe.dev",
  "Date/Publication": "2020-02-28 00:20:18 UTC",
  "RemoteUrl": "https://github.com/johnasher/transplantr",
  "RemoteRef": "HEAD",
  "RemoteSha": "9662038338390be81ef91a46131e7ddfb348ca9c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-18 10:39:22 UTC",
    "User": "root"
  },
  "Author": "John Asher [aut, cre] (ORCID: <https://orcid.org/0000-0001-8735-6453>)",
  "Maintainer": "John Asher <john.asher@outlook.com>",
  "MD5sum": "8386530cf4dd3a804902ac872d7e8275",
  "_user": "johnasher",
  "_type": "src",
  "_file": "transplantr_0.2.0.tar.gz",
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  "_filesize": 300509,
  "_sha256": "81b7c883d9bbbc2ed0323cc46152efbcbf51ac0e1dda5e1ea061b0ab7f6f3caa",
  "_created": "2026-05-18T10:39:22.000Z",
  "_published": "2026-06-02T15:48:20.699Z",
  "_distro": "noble",
  "_jobs": [
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      "time": 110,
      "config": "linux-devel-x86_64",
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      "time": 76,
      "config": "windows-devel",
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  "_buildurl": "https://github.com/r-universe/johnasher/actions/runs/26028292153",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/johnasher/transplantr",
  "_commit": {
    "id": "9662038338390be81ef91a46131e7ddfb348ca9c",
    "author": "John Asher <john.asher@outlook.com>",
    "committer": "John Asher <john.asher@outlook.com>",
    "message": "CRAN submission confirmed\n",
    "time": 1582849218
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  "_maintainer": {
    "name": "John Asher",
    "email": "john.asher@outlook.com",
    "login": "johnasher",
    "description": "",
    "uuid": 25182851,
    "orcid": "0000-0001-8735-6453"
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  "_dependencies": [
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      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "stringr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    }
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  "_owner": "johnasher",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
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  "_userbio": {
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    "type": "user",
    "name": "John Asher"
  },
  "_downloads": {
    "count": 233,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/transplantr"
  },
  "_devurl": "https://github.com/johnasher/transplantr",
  "_pkgdown": "https://transplantr.txtools.net",
  "_searchresults": 32,
  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/transplantr.html",
    "manual.pdf"
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  "_homeurl": "https://github.com/johnasher/transplantr",
  "_realowner": "johnasher",
  "_cranurl": true,
  "_releases": [
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      "version": "0.1.0",
      "date": "2020-01-07"
    },
    {
      "version": "0.2.0",
      "date": "2020-02-28"
    }
  ],
  "_exports": [
    "apri",
    "bar_score",
    "bilirubin_to_SI",
    "bilirubin_to_US",
    "bun_to_urea",
    "chi2dob",
    "ckd_epi",
    "ckd_epi_US",
    "cockcroft",
    "cockcroft_US",
    "creatinine_to_SI",
    "creatinine_to_US",
    "epts",
    "epts_lookup",
    "et_dri",
    "hla_mm_level",
    "hla_mm_level_str",
    "ibw",
    "kdpi",
    "kdpi_lookup",
    "kdpi_US",
    "liver_dri",
    "mdrd",
    "mdrd_US",
    "meld",
    "meld_na",
    "meld_na_US",
    "meld_US",
    "nankivell",
    "nankivell_spk",
    "nankivell_spk_US",
    "nankivell_US",
    "p_pass",
    "p_soft",
    "p_soft_US",
    "pdri",
    "pedi_soft",
    "peld",
    "peld_US",
    "raw_epts",
    "schwartz",
    "schwartz_US",
    "soft",
    "soft_US",
    "soft2",
    "soft2_US",
    "ukeld",
    "ukeld_US",
    "ukkdri",
    "ukkdri_q",
    "ukkrri",
    "ukkrri_q",
    "urea_to_bun",
    "uskdri",
    "uskdri_US",
    "walser",
    "walser_US",
    "watson_ukkdri"
  ],
  "_datasets": [
    {
      "name": "kidney.donors",
      "title": "Simulated dataset of donors to illustrate KDRI vignette.",
      "object": "kidney.donors",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Donor.Age",
        "Donor.Height",
        "Donor.Hypertension",
        "Donor.Sex",
        "Donor.CMV",
        "Donor.GFR",
        "Donor.Hospital_Stay"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    },
    {
      "name": "liver.pts",
      "title": "Simulated dataset to illustrate MELD calculator vignette.",
      "object": "liver.pts",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Patient.Age",
        "Patient.INR",
        "Patient.Bilirubin",
        "Patient.Creatinine",
        "Patient.Sodium",
        "Patient.Dialysed"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    },
    {
      "name": "mismatches",
      "title": "Simulated dataset to illustrate mismatches for HLA vignette.",
      "object": "mismatches",
      "class": [
        "data.frame"
      ],
      "fields": [
        "HLA.A.MM",
        "HLA.B.MM",
        "HLA.DR.MM",
        "HLA.MM",
        "HLA.MM.s"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    },
    {
      "name": "results",
      "title": "Simulated dataset to illustrate eGFR calculator vignette.",
      "object": "results",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Creatinine",
        "Age",
        "Sex",
        "Ethnicity",
        "Weight",
        "Height"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    },
    {
      "name": "results_US",
      "title": "Simulated dataset to illustrate eGFR calculator vignette.",
      "object": "results_US",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Creatinine",
        "Age",
        "Sex",
        "Ethnicity",
        "Weight",
        "Height"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    },
    {
      "name": "serial.results",
      "title": "Simulated dataset to illustrate serial results eGFR calculator vignette.",
      "object": "serial.results",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Age",
        "Sex",
        "Ethnicity",
        "Creatinine_1yr",
        "Creatinine_5yr"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "apri",
      "title": "AST to Platelet Ratio (APRI)",
      "topics": [
        "apri"
      ]
    },
    {
      "page": "bar_score",
      "title": "BAR (Balance of Risk) score in liver transplantation",
      "topics": [
        "bar_score"
      ]
    },
    {
      "page": "bilirubin_to_SI",
      "title": "Bilirubin unit converter (mg/dl -> µmol/l)",
      "topics": [
        "bilirubin_to_SI"
      ]
    },
    {
      "page": "bilirubin_to_US",
      "title": "Bilirubin unit converter (µmol/l -> mg/dl)",
      "topics": [
        "bilirubin_to_US"
      ]
    },
    {
      "page": "bun_to_urea",
      "title": "Convert BUN to urea",
      "topics": [
        "bun_to_urea"
      ]
    },
    {
      "page": "chi2dob",
      "title": "Convert CHI number to date of birth",
      "topics": [
        "chi2dob"
      ]
    },
    {
      "page": "ckd_epi",
      "title": "eGFR by CKD-EPI equation",
      "topics": [
        "ckd_epi"
      ]
    },
    {
      "page": "ckd_epi_US",
      "title": "eGFR by CKD-EPI equation (US units)",
      "topics": [
        "ckd_epi_US"
      ]
    },
    {
      "page": "cockcroft",
      "title": "Creatinine clearance by Cockcroft-Gault equation",
      "topics": [
        "cockcroft"
      ]
    },
    {
      "page": "cockcroft_US",
      "title": "Creatinine clearance by Cockcroft-Gault equation (US units)",
      "topics": [
        "cockcroft_US"
      ]
    },
    {
      "page": "creatinine_to_SI",
      "title": "Creatinine unit converter (mg/dl -> µmol/l)",
      "topics": [
        "creatinine_to_SI"
      ]
    },
    {
      "page": "creatinine_to_US",
      "title": "Creatinine unit converter (µmol/l -> mg/dl)",
      "topics": [
        "creatinine_to_US"
      ]
    },
    {
      "page": "epts",
      "title": "Estimated Post-Transplant Survival Score (EPTS)",
      "topics": [
        "epts"
      ]
    },
    {
      "page": "epts_lookup",
      "title": "EPTS lookup function",
      "topics": [
        "epts_lookup"
      ]
    },
    {
      "page": "et_dri",
      "title": "Eurotransplant Donor Risk Index in Liver Transplantation (ET-DRI)",
      "topics": [
        "et_dri"
      ]
    },
    {
      "page": "hla_mm_level",
      "title": "HLA mismatch level",
      "topics": [
        "hla_mm_level"
      ]
    },
    {
      "page": "hla_mm_level_str",
      "title": "HLA mismatch level from string",
      "topics": [
        "hla_mm_level_str"
      ]
    },
    {
      "page": "ibw",
      "title": "Ideal body weight",
      "topics": [
        "ibw"
      ]
    },
    {
      "page": "kdpi",
      "title": "US KDPI",
      "topics": [
        "kdpi"
      ]
    },
    {
      "page": "kdpi_lookup",
      "title": "US KDPI lookup function",
      "topics": [
        "kdpi_lookup"
      ]
    },
    {
      "page": "kdpi_US",
      "title": "US KDPI (US units)",
      "topics": [
        "kdpi_US"
      ]
    },
    {
      "page": "kidney.donors",
      "title": "Simulated dataset of donors to illustrate KDRI vignette.",
      "topics": [
        "kidney.donors"
      ]
    },
    {
      "page": "liver_dri",
      "title": "Liver Donor Risk Index (DRI)",
      "topics": [
        "liver_dri"
      ]
    },
    {
      "page": "liver.pts",
      "title": "Simulated dataset to illustrate MELD calculator vignette.",
      "topics": [
        "liver.pts"
      ]
    },
    {
      "page": "mdrd",
      "title": "eGFR by abbreviated MDRD equation",
      "topics": [
        "mdrd"
      ]
    },
    {
      "page": "mdrd_US",
      "title": "eGFR by abbreviated MDRD equation (US units)",
      "topics": [
        "mdrd_US"
      ]
    },
    {
      "page": "meld",
      "title": "MELD score",
      "topics": [
        "meld"
      ]
    },
    {
      "page": "meld_na",
      "title": "MELD-Na score",
      "topics": [
        "meld_na"
      ]
    },
    {
      "page": "meld_na_US",
      "title": "MELD-Na score (US units)",
      "topics": [
        "meld_na_US"
      ]
    },
    {
      "page": "meld_US",
      "title": "MELD score (US units)",
      "topics": [
        "meld_US"
      ]
    },
    {
      "page": "mismatches",
      "title": "Simulated dataset to illustrate mismatches for HLA vignette.",
      "topics": [
        "mismatches"
      ]
    },
    {
      "page": "nankivell",
      "title": "eGFR using Nankivell formula",
      "topics": [
        "nankivell"
      ]
    },
    {
      "page": "nankivell_spk",
      "title": "eGFR using the Nankivell-SPK formula",
      "topics": [
        "nankivell_spk"
      ]
    },
    {
      "page": "nankivell_spk_US",
      "title": "eGFR using the Nankivell-SPK formula (US units)",
      "topics": [
        "nankivell_spk_US"
      ]
    },
    {
      "page": "nankivell_US",
      "title": "eGFR using Nankivell formula (US units)",
      "topics": [
        "nankivell_US"
      ]
    },
    {
      "page": "p_pass",
      "title": "P-PASS pre-procurement pancreas suitability score",
      "topics": [
        "p_pass"
      ]
    },
    {
      "page": "p_soft",
      "title": "P-SOFT Score",
      "topics": [
        "p_soft"
      ]
    },
    {
      "page": "p_soft_US",
      "title": "P-SOFT Score (US units)",
      "topics": [
        "p_soft_US"
      ]
    },
    {
      "page": "pdri",
      "title": "Pancreas donor risk index",
      "topics": [
        "pdri"
      ]
    },
    {
      "page": "pedi_soft",
      "title": "Pedi-SOFT Score",
      "topics": [
        "pedi_soft"
      ]
    },
    {
      "page": "peld",
      "title": "PELD score",
      "topics": [
        "peld"
      ]
    },
    {
      "page": "peld_US",
      "title": "PELD score (US units)",
      "topics": [
        "peld_US"
      ]
    },
    {
      "page": "raw_epts",
      "title": "Estimated Post-Transplant Survival Score (EPTS)",
      "topics": [
        "raw_epts"
      ]
    },
    {
      "page": "results",
      "title": "Simulated dataset to illustrate eGFR calculator vignette.",
      "topics": [
        "results"
      ]
    },
    {
      "page": "results_US",
      "title": "Simulated dataset to illustrate eGFR calculator vignette.",
      "topics": [
        "results_US"
      ]
    },
    {
      "page": "schwartz",
      "title": "eGFR by bedside Schwartz formula",
      "topics": [
        "schwartz"
      ]
    },
    {
      "page": "schwartz_US",
      "title": "eGFR by bedside Schwartz formula (US units)",
      "topics": [
        "schwartz_US"
      ]
    },
    {
      "page": "serial.results",
      "title": "Simulated dataset to illustrate serial results eGFR calculator vignette.",
      "topics": [
        "serial.results"
      ]
    },
    {
      "page": "soft",
      "title": "SOFT score (Survival Outcomes Following Liver Transplantation)",
      "topics": [
        "soft"
      ]
    },
    {
      "page": "soft_US",
      "title": "SOFT score (Survival Outcomes Following Liver Transplantation) (US units)",
      "topics": [
        "soft_US"
      ]
    },
    {
      "page": "soft2",
      "title": "SOFT score from P-SOFT",
      "topics": [
        "soft2"
      ]
    },
    {
      "page": "soft2_US",
      "title": "SOFT score from P-SOFT (US units)",
      "topics": [
        "soft2_US"
      ]
    },
    {
      "page": "ukeld",
      "title": "UKELD score",
      "topics": [
        "ukeld"
      ]
    },
    {
      "page": "ukeld_US",
      "title": "UKELD score (US units)",
      "topics": [
        "ukeld_US"
      ]
    },
    {
      "page": "ukkdri",
      "title": "UK Kidney Donor Risk Index (NHSBT, 2019 version)",
      "topics": [
        "ukkdri"
      ]
    },
    {
      "page": "ukkdri_q",
      "title": "UK Kidney Donor Risk Index Quartile (2019)",
      "topics": [
        "ukkdri_q"
      ]
    },
    {
      "page": "ukkrri",
      "title": "UK Kidney Recipient Risk Index (NHSBT, 2019 version)",
      "topics": [
        "ukkrri"
      ]
    },
    {
      "page": "ukkrri_q",
      "title": "UK Kidney Recipient Risk Index Quartile (2019)",
      "topics": [
        "ukkrri_q"
      ]
    },
    {
      "page": "urea_to_bun",
      "title": "Convert urea to BUN",
      "topics": [
        "urea_to_bun"
      ]
    },
    {
      "page": "uskdri",
      "title": "US Kidney Donor Risk Index",
      "topics": [
        "uskdri"
      ]
    },
    {
      "page": "uskdri_US",
      "title": "US Kidney Donor Risk Index (US units)",
      "topics": [
        "uskdri_US"
      ]
    },
    {
      "page": "walser",
      "title": "eGFR using the Walser formula",
      "topics": [
        "walser"
      ]
    },
    {
      "page": "walser_US",
      "title": "eGFR using the Walser formula (US units)",
      "topics": [
        "walser_US"
      ]
    },
    {
      "page": "watson_ukkdri",
      "title": "UK Kidney Donor Risk Index (2012 version)",
      "topics": [
        "watson_ukkdri"
      ]
    }
  ],
  "_readme": "https://github.com/johnasher/transplantr/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "egfr.Rmd",
      "filename": "egfr.html",
      "title": "Estimated GFR",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "CKD-EPI formula",
        "Calculating serial eGFR Results",
        "Abbreviated MDRD formula",
        "Schwartz formula",
        "Cockcroft-Gault formula",
        "Formulae to be added in future",
        "References"
      ],
      "created": "2019-12-10 23:44:05",
      "modified": "2020-02-28 00:06:20",
      "commits": 8
    },
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